Rotating Squares Look Like Pincushions.

Rotating squares appeared to be distorted into pincushions with concave sides. These illusory shape changes were caused by a perceived compression along the curved path of motion

Illusory drifting within a window that moves across a flickering background.

When a striped disk moves across a flickering background, the stripes paradoxically seem to move faster than the disk itself. We attribute this new illusion to reverse-phi motion, which slows down the disk rim but does not affect the stripes

Motion-Driven Transparency and Opacity.

When two adjacent surfaces move in step, this can generate a sensation of transparency, even in the absence of intersections. Stopping the motion of one surface makes it look suddenly opaque

Steady-State Visual Evoked Potentials Elicited from Early Visual Cortex Reflect Both Perceptual Color Space and Cone-Opponent Mechanisms

Funding Japan Society for the Promotion of Science (JSPS KAKENHI grant number JP18K13365 to S.K., JP18H04995 to I.K.) Notes S.K. was also supported by the grant from Building of Consortia for the Development of Human Resources in Science and Technology program by Japan Science and Technology Agency. S.K.A. is very grateful to Satoshi Shioiri for inviting him to Tohoku University, which enabled this collaboration. Part of this study has appeared in the form of conference proceedings (Kaneko et al. 2018). Data and codes used in this study are available at https://osf.io/m47df/.Peer reviewedPublisher PD

The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force

「コロナ制圧タスクフォース」COVID-19患者由来の血液細胞における遺伝子発現の網羅的解析 --重症度に応じた遺伝子発現の変化には、ヒトゲノム配列の個人差が影響する--. 京都大学プレスリリース. 2022-08-23.Coronavirus disease 2019 (COVID-19) is a recently-emerged infectious disease that has caused millions of deaths, where comprehensive understanding of disease mechanisms is still unestablished. In particular, studies of gene expression dynamics and regulation landscape in COVID-19 infected individuals are limited. Here, we report on a thorough analysis of whole blood RNA-seq data from 465 genotyped samples from the Japan COVID-19 Task Force, including 359 severe and 106 non-severe COVID-19 cases. We discover 1169 putative causal expression quantitative trait loci (eQTLs) including 34 possible colocalizations with biobank fine-mapping results of hematopoietic traits in a Japanese population, 1549 putative causal splice QTLs (sQTLs; e.g. two independent sQTLs at TOR1AIP1), as well as biologically interpretable trans-eQTL examples (e.g., REST and STING1), all fine-mapped at single variant resolution. We perform differential gene expression analysis to elucidate 198 genes with increased expression in severe COVID-19 cases and enriched for innate immune-related functions. Finally, we evaluate the limited but non-zero effect of COVID-19 phenotype on eQTL discovery, and highlight the presence of COVID-19 severity-interaction eQTLs (ieQTLs; e.g., CLEC4C and MYBL2). Our study provides a comprehensive catalog of whole blood regulatory variants in Japanese, as well as a reference for transcriptional landscapes in response to COVID-19 infection

DOCK2 is involved in the host genetics and biology of severe COVID-19

「コロナ制圧タスクフォース」COVID-19疾患感受性遺伝子DOCK2の重症化機序を解明 --アジア最大のバイオレポジトリーでCOVID-19の治療標的を発見--. 京都大学プレスリリース. 2022-08-10.Identifying the host genetic factors underlying severe COVID-19 is an emerging challenge. Here we conducted a genome-wide association study (GWAS) involving 2, 393 cases of COVID-19 in a cohort of Japanese individuals collected during the initial waves of the pandemic, with 3, 289 unaffected controls. We identified a variant on chromosome 5 at 5q35 (rs60200309-A), close to the dedicator of cytokinesis 2 gene (DOCK2), which was associated with severe COVID-19 in patients less than 65 years of age. This risk allele was prevalent in East Asian individuals but rare in Europeans, highlighting the value of genome-wide association studies in non-European populations. RNA-sequencing analysis of 473 bulk peripheral blood samples identified decreased expression of DOCK2 associated with the risk allele in these younger patients. DOCK2 expression was suppressed in patients with severe cases of COVID-19. Single-cell RNA-sequencing analysis (n = 61 individuals) identified cell-type-specific downregulation of DOCK2 and a COVID-19-specific decreasing effect of the risk allele on DOCK2 expression in non-classical monocytes. Immunohistochemistry of lung specimens from patients with severe COVID-19 pneumonia showed suppressed DOCK2 expression. Moreover, inhibition of DOCK2 function with CPYPP increased the severity of pneumonia in a Syrian hamster model of SARS-CoV-2 infection, characterized by weight loss, lung oedema, enhanced viral loads, impaired macrophage recruitment and dysregulated type I interferon responses. We conclude that DOCK2 has an important role in the host immune response to SARS-CoV-2 infection and the development of severe COVID-19, and could be further explored as a potential biomarker and/or therapeutic target

Motion-Driven Transparency and Opacity.

When two adjacent surfaces move in step, this can generate a sensation of transparency, even in the absence of intersections. Stopping the motion of one surface makes it look suddenly opaque

Orbiting Black/White Rays Produce an "Illusory" Gray Disk.

An orbiting ray pattern produces an unexpected gray disk. Here we demonstrate this visual effect and its possible insights into visual temporal integration

Orbiting Black/White Rays Produce an "Illusory" Gray Disk.

An orbiting ray pattern produces an unexpected gray disk. Here we demonstrate this visual effect and its possible insights into visual temporal integration